LOC_Os11g38670.1 (LOC_Os11g38670)

Aliases : LOC_Os11g38670

Description : DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica (sp|q2r1m8|rh52c_orysj : 879.0)

Gene families : OG0002081 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002081_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os11g38670.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00104p00136740	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Als_g46511	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.02	OrthoFinder output from all 47 species
Pnu_g06800	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.02	OrthoFinder output from all 47 species
Ppi_g30273	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.02	OrthoFinder output from all 47 species
Spa_g26032	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	396	511
IPR011545	DEAD/DEAH_box_helicase_dom	179	360

External Links

No external refs found!