LOC_Os11g32880.1 (LOC_Os11g32880)

Aliases : LOC_Os11g32880

Description : ATP-dependent DNA helicase At3g02060, chloroplastic OS=Arabidopsis thaliana (sp|f4jfj3|y3206_arath : 871.0)

Gene families : OG0004721 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004721_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os11g32880.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00242110	evm_27.TU.AmTr_v1...	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.04	OrthoFinder output from all 47 species
AT3G02060	No alias	DEAD/DEAH box helicase, putative	0.08	OrthoFinder output from all 47 species
Aev_g07951	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g17279	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene60595.t1	Aspi01Gene60595	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene60597.t1	Aspi01Gene60597	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0257.g060601	No alias	not classified & original description: CDS=200-3178	0.03	OrthoFinder output from all 47 species
Cba_g18567	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.13G022800.1	Ceric.13G022800	not classified & original description: pacid=50636376...	0.06	OrthoFinder output from all 47 species
Dac_g42486	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g04126	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g04918	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01032955001	No alias	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.03	OrthoFinder output from all 47 species
Gb_38755	No alias	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.04	OrthoFinder output from all 47 species
Len_g28141	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05693	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g10930	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g30043	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g10408	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006439	No alias	not classified & original description: CDS=315-2762	0.02	OrthoFinder output from all 47 species
Sam_g42734	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Smo77276	No alias	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.04	OrthoFinder output from all 47 species
Solyc02g094590.3.1	Solyc02g094590	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.07	OrthoFinder output from all 47 species
Tin_g27619	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e011170_P004	Zm00001e011170	ATP-dependent DNA helicase At3g02060, chloroplastic...	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004325	ferrochelatase activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006783	heme biosynthetic process	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0042168	heme metabolic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003711	CarD-like/TRCF_RID	157	251
IPR011545	DEAD/DEAH_box_helicase_dom	301	439
IPR001650	Helicase_C	486	587

External Links

No external refs found!

LOC_Os11g32880.1 (LOC_Os11g32880)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation