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  5. LOC_Os02g42210.1

LOC_Os02g42210.1


Description : Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana (sp|q9m065|pp352_arath : 224.0)


Gene families : OG_01_0004280 (Archaeplastida) Phylogenetic Tree(s): OG_01_0004280_tree ,
OG_02_0002954 (LandPlants) Phylogenetic Tree(s): OG_02_0002954_tree ,
OG_03_0000415 (SeedPlants) Phylogenetic Tree(s): OG_03_0000415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g42210.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00105510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.02 Archaeplastida
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
Solyc02g062910.3.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 Archaeplastida
Solyc02g085650.4.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 Archaeplastida
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 Archaeplastida
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.13 Archaeplastida
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.1 Archaeplastida
AMTR_s00029p00105510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.02 LandPlants
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 LandPlants
Solyc02g062910.3.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 LandPlants
Solyc02g085650.4.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 LandPlants
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 LandPlants
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.13 LandPlants
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.1 LandPlants
AMTR_s00029p00105510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.02 SeedPlants
AMTR_s00032p00197250 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g55890,... 0.02 SeedPlants
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
AT3G13160 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 SeedPlants
GSVIVT01004801001 No alias Protein biosynthesis.organelle translation... 0.02 SeedPlants
GSVIVT01018992001 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 SeedPlants
MA_138370g0010 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.02 SeedPlants
Solyc02g062910.3.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 SeedPlants
Solyc02g079830.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.04 SeedPlants
Solyc02g085650.4.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 SeedPlants
Solyc03g031460.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.02 SeedPlants
Solyc05g012250.3.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.02 SeedPlants
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.02 SeedPlants
Zm00001e003447_P001 No alias no hits & (original description: none) 0.04 SeedPlants
Zm00001e015190_P001 No alias Pentatricopeptide repeat-containing protein At2g18520,... 0.12 SeedPlants
Zm00001e019591_P001 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.1 SeedPlants
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.06 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 211 251
IPR002885 Pentatricopeptide_repeat 279 327
IPR002885 Pentatricopeptide_repeat 353 380
IPR002885 Pentatricopeptide_repeat 178 207
No external refs found!