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  5. LOC_Os11g26910.1

LOC_Os11g26910.1 (ASK2, SKP1B, LOC_Os11g26910)


Aliases : ASK2, SKP1B, LOC_Os11g26910

Description : target protein binding component SKP1/ASK1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes


Gene families : OG0000379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000379_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os11g26910.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00153350 ASK1, ATSKP1,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Adi_g000276 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Aob_g34703 ASK2, SKP1B ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Cre12.g501200 ASK2, SKP1B Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
GSVIVT01006330001 ASK1, ATSKP1,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01009967001 ASK2, SKP1B Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Len_g12707 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
MA_10428641g0010 ASK2, SKP1B target protein binding component SKP1/ASK1 of... 0.03 OrthoFinder output from all 47 species
Pp3c23_19260V3.1 ASK1, ATSKP1,... SKP1-like 4 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004124 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Solyc01g111650.3.1 ASK2, SKP1B,... target protein binding component SKP1/ASK1 of... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR016073 Skp1_comp_POZ 8 67
IPR016072 Skp1_comp_dimer 124 171
No external refs found!