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  5. LOC_Os10g42820.1

LOC_Os10g42820.1 (LOC_Os10g42820)


Aliases : LOC_Os10g42820

Description : calcium-permeable channel (OSCA)


Gene families : OG0000264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g42820.1

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0104.g044705 No alias calcium-permeable channel *(OSCA) & original... 0.02 OrthoFinder output from all 47 species
Cre08.g360500 No alias CSC1-like protein At1g62320 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g19010 ERD4 calcium-permeable channel *(OSCA) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_06754 RXW8 calcium-permeable channel (OSCA) 0.07 OrthoFinder output from all 47 species
Ore_g20127 No alias calcium-permeable channel *(OSCA) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13797 No alias calcium-permeable channel *(OSCA) & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e003059_P001 HYP1, ATHYP1,... calcium-permeable channel (OSCA) 0.06 OrthoFinder output from all 47 species
Zm00001e012117_P001 RXW8, Zm00001e012117 calcium-permeable channel (OSCA) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032880 Csc1/OSCA1-like_N 7 174
IPR003864 CSC1/OSCA1-like_7TM 368 640
IPR027815 CSC1/OSCA1-like_cyt 195 357
No external refs found!