LOC_Os10g41470.1 (LOC_Os10g41470)

Aliases : LOC_Os10g41470

Description : component RPL27 of LSU proteome component

Gene families : OG0000924 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000924_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os10g41470.1
Cluster	HCCA: Cluster_142

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00176990	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
AMTR_s00045p00086530	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
AT3G22230	No alias	Ribosomal L27e protein family	0.1	OrthoFinder output from all 47 species
AT4G15000	No alias	Ribosomal L27e protein family	0.1	OrthoFinder output from all 47 species
Adi_g042919	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g088547	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g119864	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Adi_g128386	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g18759	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g21879	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g25310	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g30984	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g30907	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Aop_g33173	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Aspi01Gene03460.t1	Aspi01Gene03460	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Azfi_s0123.g048378	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g35098	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.11G027700.1	Ceric.11G027700	component *(eL27) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.22G025200.1	Ceric.22G025200	component *(eL27) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.22G025300.1	Ceric.22G025300	component *(eL27) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021275.23	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Cre17.g701650	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Dac_g26159	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g32145	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g40041	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01012080001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
GSVIVT01020410001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Gb_36674	No alias	component RPL27 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Lfl_g00268	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_3390g0010	No alias	component RPL27 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Mp4g23910.1	No alias	component RPL27 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Msp_g18021	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Nbi_g20151	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g40024	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g04282	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g22766	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0521.g027461	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g28095	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g30675	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g30677	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g36664	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Smo166700	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Solyc06g073300.1.1	Solyc06g073300	component RPL27 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Solyc07g043360.1.1	Solyc07g043360	component RPL27 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Spa_g03073	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Spa_g24106	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Spa_g33923	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Spa_g44975	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Tin_g43604	No alias	component *(eL27) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001141	Ribosomal_L27e	52	136
IPR005824	KOW	7	35

External Links

No external refs found!

LOC_Os10g41470.1 (LOC_Os10g41470)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation