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  5. LOC_Os10g40140.1

LOC_Os10g40140.1 (LOC_Os10g40140)


Aliases : LOC_Os10g40140

Description : contact site protein (VAP27) of ER-cytoskeleton-plasmamembrane interface


Gene families : OG0000655 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000655_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g40140.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00209140 evm_27.TU.AmTr_v1... Vesicle-associated protein 2-1 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Adi_g088258 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Als_g03680 PVA12 contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
Aob_g03941 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Cba_g21723 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Ceric.22G049200.1 VAP27, VAP27-1,... contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
Cre03.g196900 VAP27, VAP27-1,... Vesicle-associated protein 1-1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Ehy_g28468 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
GSVIVT01017816001 PVA12 Vesicle-associated protein 1-2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os10g40170.1 LOC_Os10g40170 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g03669 VAP27, VAP27-1,... contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
MA_56506g0010 VAP27, VAP27-1,... contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
Solyc08g007200.4.1 Solyc08g007200 contact site protein (VAP27) of... 0.03 OrthoFinder output from all 47 species
Solyc08g007390.2.1 PVA12, Solyc08g007390 contact site protein (VAP27) of... 0.08 OrthoFinder output from all 47 species
Tin_g20156 PVA12 contact site protein (VAP27) of... 0.02 OrthoFinder output from all 47 species
Zm00001e023141_P002 Zm00001e023141 contact site protein (VAP27) of... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR000535 MSP_dom 9 105
No external refs found!