LOC_Os10g39190.1 (NGA1, LOC_Os10g39190)


Aliases : NGA1, LOC_Os10g39190

Description : transcription factor (RAV/NGATHA)


Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g39190.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00040300 NGA1,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT1G68840 EDF2, AtRAV2,... related to ABI3/VP1 2 0.03 OrthoFinder output from all 47 species
AT3G11580 No alias AP2/B3-like transcriptional factor family protein 0.02 OrthoFinder output from all 47 species
Adi_g058439 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Adi_g114045 NGA1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g44854 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Als_g20506 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Aob_g11266 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene28731.t1 TEM1, EDF1,... AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0068.g036380 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Cba_g71540 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Ceric.16G035200.1 TEM1, EDF1,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ceric.20G072500.1 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ceric.20G072600.1 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Dac_g22480 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Dac_g39956 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Dde_g25414 TEM1, EDF1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Dde_g29898 NGA3 RAV/NGATHA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16987 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01011947001 EDF2, AtRAV2,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
Gb_18035 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
LOC_Os01g49830.1 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 OrthoFinder output from all 47 species
LOC_Os11g05740.1 LOC_Os11g05740 transcription factor (RAV/NGATHA) 0.05 OrthoFinder output from all 47 species
LOC_Os12g06080.1 LOC_Os12g06080 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
Len_g14264 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Len_g36994 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g21540 NGA1 RAV/NGATHA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_18923g0010 EDF4, RAV1 transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
MA_246350g0010 EDF4, RAV1 transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
MA_3834g0010 EDF2, AtRAV2,... transcription factor (RAV/NGATHA) 0.03 OrthoFinder output from all 47 species
MA_94318g0010 TEM1, EDF1 transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
Nbi_g11598 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g22199 EDF4, RAV1 AP2-RAV-type transcription factor *(EDF) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g32810 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Sam_g30092 No alias AP2-RAV-type transcription factor *(EDF) & original... 0.02 OrthoFinder output from all 47 species
Solyc10g083210.2.1 Solyc10g083210 transcription factor (RAV/NGATHA) 0.04 OrthoFinder output from all 47 species
Solyc12g098460.2.1 Solyc12g098460 AP2/ERF and B3 domain-containing transcription factor... 0.04 OrthoFinder output from all 47 species
Spa_g28812 EDF2, AtRAV2,... AP2-RAV-type transcription factor *(EDF) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e000156_P001 NGA3, Zm00001e000156 transcription factor (RAV/NGATHA) 0.02 OrthoFinder output from all 47 species
Zm00001e016956_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.05 OrthoFinder output from all 47 species
Zm00001e020092_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 OrthoFinder output from all 47 species
Zm00001e028111_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 OrthoFinder output from all 47 species
Zm00001e032325_P001 EDF2, AtRAV2,... transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.07 OrthoFinder output from all 47 species
Zm00001e040214_P001 NGA3, Zm00001e040214 transcription factor (RAV/NGATHA) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 35 152
No external refs found!