LOC_Os10g36530.1 (LOC_Os10g36530)


Aliases : LOC_Os10g36530

Description : DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana (sp|o65607|msh3_arath : 90.1)


Gene families : OG0002233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002233_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g36530.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00265580 evm_27.TU.AmTr_v1... DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AMTR_s00018p00168540 evm_27.TU.AmTr_v1... DNA mismatch repair protein MSH1, mitochondrial... 0.02 OrthoFinder output from all 47 species
AT1G65070 No alias DNA mismatch repair protein MutS, type 2 0.06 OrthoFinder output from all 47 species
Ala_g09056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11010 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0068.g036437 No alias not classified & original description: CDS=249-2714 0.03 OrthoFinder output from all 47 species
Cba_g25384 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.34G068900.1 Ceric.34G068900 not classified & original description: pacid=50624175... 0.07 OrthoFinder output from all 47 species
Ehy_g12779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g11550.1 No alias DNA mismatch repair protein MSH1, mitochondrial... 0.08 OrthoFinder output from all 47 species
Msp_g14305 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g26063 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19502 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g16765 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g59488 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g06740 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13786 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006512_P001 Zm00001e006512 DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR000432 DNA_mismatch_repair_MutS_C 326 517
No external refs found!