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  5. LOC_Os10g35810.1

LOC_Os10g35810.1 (LOC_Os10g35810)


Aliases : LOC_Os10g35810

Description : Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana (sp|p81760|tl17_arath : 263.0)


Gene families : OG0007246 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g35810.1
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00263380 evm_27.TU.AmTr_v1... Thylakoid lumenal 17.4 kDa protein, chloroplastic... 0.05 OrthoFinder output from all 47 species
Ala_g00689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01060 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.38G025800.1 Ceric.38G025800 not classified & original description: pacid=50579324... 0.07 OrthoFinder output from all 47 species
Dac_g02073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17850 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Dde_g16670 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g16556 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01038586001 No alias Thylakoid lumenal 17.4 kDa protein, chloroplastic... 0.14 OrthoFinder output from all 47 species
Gb_09516 No alias Thylakoid lumenal 17.4 kDa protein, chloroplastic... 0.07 OrthoFinder output from all 47 species
Len_g04136 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Mp1g10990.1 No alias Thylakoid lumenal 17.4 kDa protein, chloroplastic... 0.02 OrthoFinder output from all 47 species
Msp_g00295 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g12697 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ore_g37297 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g37298 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57312 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g32727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015268 No alias not classified & original description: CDS=42-668 0.03 OrthoFinder output from all 47 species
Sam_g08902 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g082890.3.1 Solyc03g082890 Thylakoid lumenal 17.4 kDa protein, chloroplastic... 0.08 OrthoFinder output from all 47 species
Spa_g53789 No alias not classified & original description: none 0.13 OrthoFinder output from all 47 species
Tin_g03066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012591_P001 Zm00001e012591 Thylakoid lumenal 17.4 kDa protein, chloroplastic... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001646 5peptide_repeat 136 169
IPR001646 5peptide_repeat 172 208
No external refs found!