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  5. LOC_Os10g35760.2

LOC_Os10g35760.2 (LOC_Os10g35760)


Aliases : LOC_Os10g35760

Description : Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana (sp|q9sku6|pp166_arath : 277.0)


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g35760.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00264580 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G21705 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G27460 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g016255 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04726 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g30824 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04541 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07362 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11741 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33654 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09907 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0492.g073535 No alias not classified & original description: CDS=381-2006 0.04 OrthoFinder output from all 47 species
Cba_g11231 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.31G052700.1 Ceric.31G052700 RNA editing factor *(POCO) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g21533 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01745 PPR596 RNA editing factor *(POCO) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g14866 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24432 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03895 No alias RNA editing factor *(POCO) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.03 OrthoFinder output from all 47 species
GSVIVT01018303001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.03 OrthoFinder output from all 47 species
GSVIVT01020533001 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
GSVIVT01024964001 No alias Pentatricopeptide repeat-containing protein At1g07590,... 0.03 OrthoFinder output from all 47 species
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.05 OrthoFinder output from all 47 species
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.03 OrthoFinder output from all 47 species
Gb_03508 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.03 OrthoFinder output from all 47 species
Gb_09452 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.05 OrthoFinder output from all 47 species
Gb_14211 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
Gb_27873 No alias RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
Gb_38114 No alias RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.04 OrthoFinder output from all 47 species
LOC_Os10g35730.1 LOC_Os10g35730 Pentatricopeptide repeat-containing protein At4g02820,... 0.04 OrthoFinder output from all 47 species
Len_g19004 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g14100 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_100637g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
MA_10431989g0010 No alias RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
MA_10435629g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
MA_29806g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.02 OrthoFinder output from all 47 species
MA_77400g0010 No alias Pentatricopeptide repeat-containing protein At1g15480,... 0.03 OrthoFinder output from all 47 species
MA_777619g0010 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.02 OrthoFinder output from all 47 species
MA_94340g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
Msp_g31351 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g42997 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18305 No alias RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g25307 PPR596 RNA editing factor *(POCO) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0231.g026432 No alias RNA editing factor *(POCO) & original description: CDS=165-2177 0.02 OrthoFinder output from all 47 species
Smo413483 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.03 OrthoFinder output from all 47 species
Smo416459 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.03 OrthoFinder output from all 47 species
Smo420704 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.03 OrthoFinder output from all 47 species
Solyc01g079320.4.1 Solyc01g079320 Pentatricopeptide repeat-containing protein At1g02370,... 0.05 OrthoFinder output from all 47 species
Solyc02g078330.3.1 Solyc02g078330 Pentatricopeptide repeat-containing protein At2g20710,... 0.07 OrthoFinder output from all 47 species
Solyc07g054090.3.1 Solyc07g054090 Pentatricopeptide repeat-containing protein At2g20710,... 0.04 OrthoFinder output from all 47 species
Tin_g14511 No alias RNA ediTing factor *(POCO) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012594_P001 Zm00001e012594 Pentatricopeptide repeat-containing protein At4g21705,... 0.03 OrthoFinder output from all 47 species
Zm00001e026211_P002 Zm00001e026211 Pentatricopeptide repeat-containing protein At1g02370,... 0.02 OrthoFinder output from all 47 species
Zm00001e033119_P002 Zm00001e033119 RNA editing factor (POCO) 0.04 OrthoFinder output from all 47 species
Zm00001e036620_P001 Zm00001e036620 Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
Zm00001e039746_P002 Zm00001e039746 Pentatricopeptide repeat-containing protein At4g02820,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 366 392
IPR002885 Pentatricopeptide_repeat 153 181
IPR002885 Pentatricopeptide_repeat 184 231
No external refs found!