LOC_Os10g34750.1 (ATLIG1, LIG1, LOC_Os10g34750)


Aliases : ATLIG1, LIG1, LOC_Os10g34750

Description : DNA replication DNA ligase (LIG1). DNA ligase (LIG1)


Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g34750.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00064p00189190 ATLIG1, LIG1,... Enzyme classification.EC_6 ligases.EC_6.5 ligase forming... 0.02 OrthoFinder output from all 47 species
Adi_g057159 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Adi_g109165 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Aev_g20608 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Als_g01152 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01031470001 ATLIG1, LIG1 DNA damage response.DNA repair mechanisms.base excision... 0.04 OrthoFinder output from all 47 species
Len_g30745 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Pir_g18058 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.02 OrthoFinder output from all 47 species
Ppi_g48441 AtLIG6, LIG6 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Ppi_g48452 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.04 OrthoFinder output from all 47 species
Solyc11g066370.2.1 ATLIG1, LIG1,... DNA replication DNA ligase (LIG1). DNA ligase (LIG1) 0.03 OrthoFinder output from all 47 species
Tin_g07751 ATLIG1, LIG1 EC_6.5 ligase forming phosphoric ester bond & original... 0.03 OrthoFinder output from all 47 species
Zm00001e020139_P002 AtLIG6, LIG6,... DNA ligase (LIG6) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR012310 DNA_ligase_ATP-dep_cent 437 641
IPR012308 DNA_ligase_ATP-dep_N 196 371
IPR012309 DNA_ligase_ATP-dep_C 666 777
No external refs found!