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  5. LOC_Os10g31970.1

LOC_Os10g31970.1 (CHR20, ATRX, LOC_Os10g31970)


Aliases : CHR20, ATRX, LOC_Os10g31970

Description : chromatin remodeling factor (ATRX)


Gene families : OG0003866 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003866_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g31970.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT1G08600 CHR20, ATRX P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Adi_g021727 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21446 CHR20, ATRX not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g13390 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14539.t1 CHR20, ATRX,... chromatin remodeling factor *(ATRX) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene40157.t1 CHR20, ATRX,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene40160.t1 CHR20, ATRX,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G086900.1 CHR20, ATRX,... chromatin remodeling factor *(ATRX) & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020556.80 CHR20, ATRX Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021760.3 CHR20, ATRX Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01023393001 CHR20, ATRX Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Gb_33142 CHR20, ATRX chromatin remodeling factor (ATRX) 0.04 OrthoFinder output from all 47 species
Lfl_g03487 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.03 OrthoFinder output from all 47 species
Smo441095 CHR20, ATRX Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Solyc04g050150.4.1 CHR20, ATRX,... chromatin remodeling factor (ATRX) 0.04 OrthoFinder output from all 47 species
Solyc04g050160.4.1 CHR20, ATRX,... Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Spa_g06181 CHR20, ATRX chromatin remodeling factor *(ATRX) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 1119 1243
IPR000330 SNF2_N 731 1037
No external refs found!