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  5. LOC_Os10g30850.1

LOC_Os10g30850.1 (LOC_Os10g30850)


Aliases : LOC_Os10g30850

Description : RING-HC-class E3 ligase


Gene families : OG0001060 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001060_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g30850.1
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT3G47160 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Azfi_s0136.g050967 No alias E3 ubiquitin ligase & original description: CDS=379-978 0.04 OrthoFinder output from all 47 species
Ceric.04G074300.1 Ceric.04G074300 E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
GSVIVT01002021001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01024747001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 OrthoFinder output from all 47 species
GSVIVT01033965001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
MA_20567g0010 No alias RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Nbi_g01971 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11231 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g078460.3.1 Solyc02g078460 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Zm00001e004453_P001 Zm00001e004453 RING-HC-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e004685_P002 Zm00001e004685 RING-HC-class E3 ligase 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 148 187
No external refs found!