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  5. LOC_Os10g29560.1

LOC_Os10g29560.1 (LOC_Os10g29560)


Aliases : LOC_Os10g29560

Description : component MPE1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0001168 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001168_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g29560.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g21685 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Als_g20650 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Aob_g15312 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Aop_g11290 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Cba_g32528 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Ceric.39G057500.1 Ceric.39G057500 component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021127.93 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.01 OrthoFinder output from all 47 species
Cre12.g543303 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g12061 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Dcu_g06496 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ehy_g07907 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Gb_27645 No alias component MPE1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Mp3g23390.1 No alias component MPE1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Pir_g05416 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Spa_g10359 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Zm00001e004737_P002 Zm00001e004737 component MPE1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009411 response to UV IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
InterPro domains Description Start Stop
IPR014891 DWNN_domain 3 76
IPR025829 Zn_knuckle_CX2CX3GHX4C 206 226
No external refs found!