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  5. LOC_Os10g23100.1

LOC_Os10g23100.1 (AtRABA4a, RABA4a,...)


Aliases : AtRABA4a, RABA4a, LOC_Os10g23100

Description : A-class RAB GTPase


Gene families : OG0001718 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001718_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g23100.1

Target Alias Description ECC score Gene Family Method Actions
AT4G39990 ATRABA4B, ATGB3,... RAB GTPase homolog A4B 0.03 OrthoFinder output from all 47 species
AT5G65270 AtRABA4a, RABA4a RAB GTPase homolog A4A 0.06 OrthoFinder output from all 47 species
Als_g08712 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09530 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0155.g053662 ATRABA4C, RABA4C, SMG1 A-class RAB GTPase & original description: CDS=399-1052 0.05 OrthoFinder output from all 47 species
Cba_g14412 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g12933 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12448 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04534 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g01882 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06105 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09920 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0038.g011977 RABA4D, ATRABA4D A-class RAB GTPase & original description: CDS=720-1379 0.03 OrthoFinder output from all 47 species
Solyc11g010100.2.1 AtRABA4a,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Spa_g09509 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g38230 RABA4D, ATRABA4D A-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000673_P001 AtRABA4a,... A-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Zm00001e012878_P002 AtRABA4a,... A-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Zm00001e038828_P001 AtRABA4a,... A-class RAB GTPase 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 12 172
No external refs found!