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  5. LOC_Os10g22950.1

LOC_Os10g22950.1 (CAMTA3, SR1, LOC_Os10g22950)


Aliases : CAMTA3, SR1, LOC_Os10g22950

Description : transcription factor (CAMTA)


Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g22950.1

Target Alias Description ECC score Gene Family Method Actions
AT4G16150 No alias calmodulin binding;transcription regulators 0.02 OrthoFinder output from all 47 species
Aop_g08505 No alias CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g22501 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene69876.t1 Aspi01Gene69876 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g14066 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002635001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01004860001 CAMTA3, SR1 RNA biosynthesis.transcriptional activation.CAMTA... 0.05 OrthoFinder output from all 47 species
GSVIVT01010510001 No alias RNA biosynthesis.transcriptional activation.CAMTA... 0.03 OrthoFinder output from all 47 species
GSVIVT01017670001 CAMTA3, SR1 RNA biosynthesis.transcriptional activation.CAMTA... 0.07 OrthoFinder output from all 47 species
Lfl_g12851 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Mp7g03150.1 CAMTA3, SR1 transcription factor (CAMTA) 0.04 OrthoFinder output from all 47 species
Ppi_g17500 CAMTA3, SR1 CAMTA-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010659 No alias CAMTA-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Smo441667 CAMTA3, SR1 RNA biosynthesis.transcriptional activation.CAMTA... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002909 IPT_dom 444 522
IPR005559 CG-1_dom 24 137
IPR000048 IQ_motif_EF-hand-BS 866 885
IPR000048 IQ_motif_EF-hand-BS 842 861
No external refs found!