LOC_Os10g21332.1 (RPS11, LOC_Os10g21332)

Aliases : RPS11, LOC_Os10g21332

Description : component psRPS11 of small ribosomal subunit proteome

Gene families : OG0004584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004584_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os10g21332.1
Cluster	HCCA: Cluster_121

Target	Alias	Description	ECC score	Gene Family Method
ATCG00750	RPS11	ribosomal protein S11	0.19	OrthoFinder output from all 47 species
Aev_g01915	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.19	OrthoFinder output from all 47 species
Aev_g37240	RPS11	component *(uS11c) of small plastid ribosomal-subunit...	0.29	OrthoFinder output from all 47 species
Ala_g07144	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Als_g62775	RPS11	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g18582	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Azfi_s0027.g023689	No alias	not classified & original description: CDS=1-321	0.06	OrthoFinder output from all 47 species
Cba_g15340	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.09	OrthoFinder output from all 47 species
Ceric.05G042000.1	RPS11, Ceric.05G042000	component *(uS11c) of small plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Ceric.05G049400.1	RPS11, Ceric.05G049400	component *(uS11c) of small plastid ribosomal-subunit...	0.18	OrthoFinder output from all 47 species
Ceric.1Z122600.1	RPS11, Ceric.1Z122600	not classified & original description: pacid=50617110...	0.06	OrthoFinder output from all 47 species
Ceric.1Z196300.1	RPS11, Ceric.1Z196300	not classified & original description: pacid=50586509...	0.06	OrthoFinder output from all 47 species
Ceric.1Z237100.1	RPS11, Ceric.1Z237100	not classified & original description: pacid=50569351...	0.06	OrthoFinder output from all 47 species
Cre06.g288400	RPS11	30S ribosomal protein S11, chloroplastic OS=Chlorella vulgaris	0.02	OrthoFinder output from all 47 species
Dcu_g39431	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Dde_g49431	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Gb_08606	NFD3	component mtRPS11 of small ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Len_g39780	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Mp4g09870.1	No alias	Ribosomal protein S11, mitochondrial OS=Marchantia...	0.13	OrthoFinder output from all 47 species
Mpzg00730.1	No alias	component psRPS11 of small ribosomal subunit proteome	0.14	OrthoFinder output from all 47 species
Nbi_g20255	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.14	OrthoFinder output from all 47 species
Pir_g07424	RPS11	not classified & original description: none	0.2	OrthoFinder output from all 47 species
Pp3c14_21450V3.1	Pp3c14_21450	ribosomal protein S11	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008794	No alias	not classified & original description: CDS=1-249	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011050	No alias	not classified & original description: CDS=1-261	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0083.g018183	No alias	not classified & original description: CDS=1-513	0.04	OrthoFinder output from all 47 species
Smo137780	RPS11	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Solyc00g500030.1.1	RPS11, Solyc00g500030	component psRPS11 of small ribosomal subunit proteome	0.22	OrthoFinder output from all 47 species
Solyc00g500075.1.1	RPS11, Solyc00g500075	component psRPS11 of small ribosomal subunit proteome	0.22	OrthoFinder output from all 47 species
Solyc01g017450.1.1	RPS11, Solyc01g017450	30S ribosomal protein S11, chloroplastic OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Spa_g02162	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Tin_g21094	RPS11	component *(uS11m) of small mitoribosomal-subunit...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001971	Ribosomal_S11	36	142

External Links

No external refs found!

LOC_Os10g21332.1 (RPS11, LOC_Os10g21332)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation