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  5. LOC_Os10g10434.1

LOC_Os10g10434.1 (LOC_Os10g10434)


Aliases : LOC_Os10g10434

Description : rRNA adenosine dimethylase (DIM1A)


Gene families : OG0002989 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002989_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g10434.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00156590 evm_27.TU.AmTr_v1... RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Ceric.35G044700.1 Ceric.35G044700 rRNA adenosine dimethylase *(DIM1A) & original... 0.02 OrthoFinder output from all 47 species
Cre01.g042900 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
MA_107802g0010 No alias Ribosomal RNA small subunit methyltransferase... 0.04 OrthoFinder output from all 47 species
Mp6g10100.1 No alias rRNA adenosine dimethylase (DIM1A) 0.02 OrthoFinder output from all 47 species
Ppi_g01145 No alias rRNA adenosine dimethylase *(DIM1A) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013790_P001 Zm00001e013790 rRNA adenosine dimethylase (DIM1A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001737 KsgA/Erm 35 262
No external refs found!