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  5. LOC_Os10g09870.1

LOC_Os10g09870.1 (LOC_Os10g09870)


Aliases : LOC_Os10g09870

Description : HVA22-like protein i OS=Arabidopsis thaliana (sp|q8le10|ha22i_arath : 216.0)


Gene families : OG0000762 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000762_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os10g09870.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
Als_g12846 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g69314 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g16927 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g38479 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g09150 HVA22J not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g45623 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g46777 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR004345 TB2_DP1_HVA22 19 97
No external refs found!