LOC_Os09g10960 (Os09g0281900)

Aliases : Os09g0281900

Description : 27.3 RNA.regulation of transcription encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors. STRUWWELPETER (SWP)

Gene families : OG_01_0001852 (Gene family) Phylogenetic Tree(s): OG0001852_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): LOC_Os09g10960
Cluster	HCCA cluster: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
AT3G04740	ATMED14, MED14, SWP	RNA polymerase II transcription mediators	0.07	Gene family
Cre03.g190550	No alias	No description available	0.01	Gene family
GSVIVT01021781001	No alias	27.3 RNA.regulation of transcription encodes a protein...	0.08	Gene family
MA_10435964g0030	No alias	27.3 RNA.regulation of transcription encodes a protein...	0.06	Gene family
Smo90823	PACid_15415631	No description available	0.06	Gene family
Solyc01g097320.3.1	Solyc01g097320.3	27.3 RNA.regulation of transcription encodes a protein...	0.06	Gene family
Zm00001d005507	GRMZM2G446872	27.3 RNA.regulation of transcription encodes a protein...	0.11	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003712	transcription coregulator activity	IEA	InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016592	mediator complex	IEA	InterProScan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044451	nucleoplasm part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013947	Mediator_Med14	10	210

External Links

No external refs found!

LOC_Os09g10960 (Os09g0281900)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation