LOC_Os10g01770.1 (LOC_Os10g01770)

Aliases : LOC_Os10g01770

Description : no hits & (original description: none)

Gene families : OG0000992 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000992_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os10g01770.1
Cluster	HCCA: Cluster_133

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os01g14200.1	LOC_Os01g14200	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os01g37580.1	LOC_Os01g37580	Replication protein A 70 kDa DNA-binding subunit B...	0.05	OrthoFinder output from all 47 species
LOC_Os02g16300.1	LOC_Os02g16300	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os03g31560.1	LOC_Os03g31560	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os05g28260.1	LOC_Os05g28260	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
LOC_Os07g02230.1	LOC_Os07g02230	Replication protein A 70 kDa DNA-binding subunit B...	0.03	OrthoFinder output from all 47 species
LOC_Os07g45750.1	LOC_Os07g45750	Replication protein A 70 kDa DNA-binding subunit B...	0.04	OrthoFinder output from all 47 species
LOC_Os09g01380.1	LOC_Os09g01380	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os10g22130.1	LOC_Os10g22130	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os11g40920.1	LOC_Os11g40920	Replication protein A 70 kDa DNA-binding subunit B...	0.02	OrthoFinder output from all 47 species
LOC_Os11g44830.1	LOC_Os11g44830	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os12g06230.1	LOC_Os12g06230	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os12g23030.1	LOC_Os12g23030	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os12g32690.1	LOC_Os12g32690	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025476	Helitron_helicase-like	71	198
IPR010285	DNA_helicase_pif1-like	498	780
IPR003871	DUF223	810	896

External Links

No external refs found!

LOC_Os10g01770.1 (LOC_Os10g01770)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation