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LOC_Os09g36440.1 (LOC_Os09g36440)


Aliases : LOC_Os09g36440

Description : basal transcription factor (TFIIb)


Gene families : OG0001894 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001894_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g36440.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g056062 No alias basal transcription factor *(TFIIb) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g14101 No alias basal transcription factor *(TFIIb) & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000663.43 No alias Transcription initiation factor IIB-2 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0052.g014065 No alias not classified & original description: CDS=1-618 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0017025 TBP-class protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0120009 intermembrane lipid transfer IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA
InterPro domains Description Start Stop
IPR013150 TFIIB_cyclin 112 176
IPR013150 TFIIB_cyclin 214 281
IPR013137 Znf_TFIIB 6 47
No external refs found!