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  5. LOC_Os09g29760.1

LOC_Os09g29760.1 (LOC_Os09g29760)


Aliases : LOC_Os09g29760

Description : Protein WHATS THIS FACTOR 1 OS=Zea mays (sp|b6ttv8|wtf1_maize : 122.0)


Gene families : OG0001240 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001240_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g29760.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AT4G08940 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.04 OrthoFinder output from all 47 species
Als_g00882 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g17771 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01485 WTF1, AtWTF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18275 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.02 OrthoFinder output from all 47 species
Dde_g30161 WTF1, AtWTF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031655001 emb1692 Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Gb_41689 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g10885 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.02 OrthoFinder output from all 47 species
Ore_g06540 WTF1, AtWTF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06541 WTF1, AtWTF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10310 WTF1, AtWTF1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33355 WTF1, AtWTF1 plastidial RNA basal splicing factor *(WTF1) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0043.g012917 WTF1, AtWTF1 not classified & original description: CDS=1-1233 0.03 OrthoFinder output from all 47 species
Solyc01g079430.2.1 Solyc01g079430 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc04g074280.1.1 Solyc04g074280 Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Zm00001e010008_P001 Zm00001e010008 Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 65 385
No external refs found!