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  5. LOC_Os09g29100.1

LOC_Os09g29100.1 (CYCD4;2, LOC_Os09g29100)


Aliases : CYCD4;2, LOC_Os09g29100

Description : cyclin (CYCD)


Gene families : OG0000395 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000395_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g29100.1

Target Alias Description ECC score Gene Family Method Actions
Ala_g23134 CYCD3;3 regulatory protein *(CYCD) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Ehy_g07454 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01000451001 CYCD6;1 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 OrthoFinder output from all 47 species
GSVIVT01003175001 CYCD3;3 Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 OrthoFinder output from all 47 species
Gb_37608 ATCYCD2;1, CYCD2;1 cyclin (CYCD) 0.02 OrthoFinder output from all 47 species
Ppi_g11937 CYCD3, CYCD3;1 regulatory protein *(CYCD) of cell cycle & original... 0.03 OrthoFinder output from all 47 species
Zm00001e034405_P005 ATCYCD2;1,... cyclin (CYCD) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 205 288
IPR006671 Cyclin_N 71 202
No external refs found!