LOC_Os09g27050.1 (AT-RSH2, ATRSH2,...)

Aliases : AT-RSH2, ATRSH2, RSH2, LOC_Os09g27050

Description : Probable GTP diphosphokinase RSH3, chloroplastic OS=Oryza sativa subsp. japonica (sp|q67uu0|rsh3_orysj : 1337.0)

Gene families : OG0001778 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001778_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os09g27050.1
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
AT3G14050	AT-RSH2, ATRSH2, RSH2	RELA/SPOT homolog 2	0.03	OrthoFinder output from all 47 species
Aop_g08507	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.04	OrthoFinder output from all 47 species
Azfi_s0102.g044481	RSH3, AT-RSH3, ATRSH3	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.02	OrthoFinder output from all 47 species
Cba_g14355	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000382.18	RSH3, AT-RSH3, ATRSH3	Probable GTP diphosphokinase RSH3, chloroplastic...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000545.31	RSH3, AT-RSH3, ATRSH3	Probable GTP diphosphokinase RSH3, chloroplastic...	0.02	OrthoFinder output from all 47 species
Gb_01654	AT-RSH2, ATRSH2, RSH2	Probable GTP diphosphokinase RSH2, chloroplastic...	0.05	OrthoFinder output from all 47 species
Gb_13950	AT-RSH2, ATRSH2, RSH2	Probable GTP diphosphokinase RSH2, chloroplastic...	0.06	OrthoFinder output from all 47 species
MA_1897g0010	AT-RSH2, ATRSH2, RSH2	Probable GTP diphosphokinase RSH3, chloroplastic...	0.03	OrthoFinder output from all 47 species
Msp_g15249	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.02	OrthoFinder output from all 47 species
Nbi_g13999	RSH3, AT-RSH3, ATRSH3	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.02	OrthoFinder output from all 47 species
Ore_g10248	AT-RSH2, ATRSH2, RSH2	bifunctional ppGpp synthetase and hydrolase *(RSH) &...	0.02	OrthoFinder output from all 47 species
Solyc03g123370.3.1	AT-RSH2, ATRSH2,...	Probable GTP diphosphokinase RSH3, chloroplastic...	0.04	OrthoFinder output from all 47 species
Zm00001e034279_P001	RSH3, AT-RSH3,...	Probable GTP diphosphokinase RSH3, chloroplastic...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEA	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0004334	fumarylacetoacetase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016822	hydrolase activity, acting on acid carbon-carbon bonds	IEP	HCCA
MF	GO:0016823	hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007685	RelA_SpoT	427	536

External Links

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LOC_Os09g27050.1 (AT-RSH2, ATRSH2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation