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Aliases : LOC_Os09g26810
Description : component LHCa6 of LHC-I complex
Gene families : OG0000742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000742_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00010p00264770 | CAB4, LHCA4,... | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.07 | OrthoFinder output from all 47 species | |
| AMTR_s00013p00180670 | LHCA2,... | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.06 | OrthoFinder output from all 47 species | |
| AMTR_s00131p00114510 | evm_27.TU.AmTr_v1... | Photosystem I chlorophyll a/b-binding protein 6,... | 0.07 | OrthoFinder output from all 47 species | |
| AT1G19150 | LHCA2*1, LHCA6 | photosystem I light harvesting complex gene 6 | 0.12 | OrthoFinder output from all 47 species | |
| AT1G45474 | LHCA5 | photosystem I light harvesting complex gene 5 | 0.06 | OrthoFinder output from all 47 species | |
| Adi_g001938 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g113731 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g11818 | LHCA5 | linker protein *(LHCa5) between PS-I complex and NDH... | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g13249 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g00950 | LHCA5 | linker protein *(LHCa5) between PS-I complex and NDH... | 0.08 | OrthoFinder output from all 47 species | |
| Ala_g00983 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g21633 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g05433 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g07082 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Als_g39064 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g02952 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g08832 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g13294 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g01073 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g12147 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g13138 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g36261 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene25390.t1 | LHCA5, Aspi01Gene25390 | linker protein *(LHCa5) between PS-I complex and NDH... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0013.g013231 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g01741 | LHCA5 | linker protein *(LHCa5) between PS-I complex and NDH... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g06305 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g36933 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.21G064400.1 | CAB4, LHCA4,... | component *(LHCa4) of LHC-I complex & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.22G073900.1 | LHCA2, Ceric.22G073900 | component *(LHCa2) of LHC-I complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.28G031700.1 | LHCA2, Ceric.28G031700 | component *(LHCa2) of LHC-I complex & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.33G037200.1 | CAB4, LHCA4,... | component *(LHCa4) of LHC-I complex & original... | 0.05 | OrthoFinder output from all 47 species | |
| Cre06.g272650 | LHCA5 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.03 | OrthoFinder output from all 47 species | |
| Cre06.g278213 | CAB4, LHCA4 | Chlorophyll a-b binding protein P4, chloroplastic... | 0.01 | OrthoFinder output from all 47 species | |
| Cre10.g425900 | CAB4, LHCA4 | Chlorophyll a-b binding protein 4, chloroplastic... | 0.02 | OrthoFinder output from all 47 species | |
| Cre10.g452050 | CAB4, LHCA4 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.01 | OrthoFinder output from all 47 species | |
| Cre16.g687900 | LHCA5 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g04068 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g04958 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g13497 | LHCA2 | component *(LHCa4) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g21646 | LHCA5 | linker protein *(LHCa5) between PS-I complex and NDH... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g02371 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Dcu_g09352 | LHCA5 | linker protein *(LHCa5) between PS-I complex and NDH... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g29671 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g34548 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g45197 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Dde_g02029 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g08226 | LHCA5 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g16731 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g20973 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01007988001 | CAB4, LHCA4 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01009498001 | LHCA5 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01010483001 | LHCA2 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01015045001 | LHCA2*1, LHCA6 | Photosynthesis.photophosphorylation.photosystem I.LHC-I... | 0.09 | OrthoFinder output from all 47 species | |
| Gb_08408 | CAB4, LHCA4 | component LHCa4 of LHC-I complex | 0.04 | OrthoFinder output from all 47 species | |
| Gb_25594 | LHCA5 | Photosystem I chlorophyll a/b-binding protein 5,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_32082 | LHCA2 | component LHCa2 of LHC-I complex | 0.05 | OrthoFinder output from all 47 species | |
| Len_g05165 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g09864 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g12015 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Len_g17260 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g00790 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g34099 | LHCA5 | linker protein *(LHCa5) between PS-I complex and NDH... | 0.05 | OrthoFinder output from all 47 species | |
| MA_65346g0010 | CAB4, LHCA4 | Chlorophyll a-b binding protein P4, chloroplastic... | 0.03 | OrthoFinder output from all 47 species | |
| Mp3g07840.1 | CAB4, LHCA4 | component LHCa4 of LHC-I complex | 0.02 | OrthoFinder output from all 47 species | |
| Mp8g13180.1 | LHCA2 | component LHCa2 of LHC-I complex | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g01556 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Msp_g04666 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Msp_g12268 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g00555 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g00735 | LHCA5 | linker protein *(LHCa5) between PS-I complex and NDH... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g07782 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g07783 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g43266 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g43267 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g17334 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g19526 | LHCA5 | linker protein *(LHCa5) between PS-I complex and NDH... | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g19768 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Pnu_g06900 | LHCA5 | linker protein *(LHCa5) between PS-I complex and NDH... | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g08290 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Pp3c4_11854V3.1 | LHCA5, Pp3c4_11854 | photosystem I light harvesting complex gene 5 | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g12016 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g18284 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g49013 | LHCA5 | linker protein *(LHCa5) between PS-I complex and NDH... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0065.g016013 | LHCA2 | component *(LHCa2) of LHC-I complex & original... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0074.g017225 | CAB4, LHCA4 | component *(LHCa4) of LHC-I complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g10927 | No alias | component *(LHCa4) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g16961 | No alias | component *(LHCa4) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g18948 | No alias | linker protein *(LHCa5) between PS-I complex and NDH... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g40409 | No alias | component *(LHCa2) of LHC-I complex & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g022900.4.1 | LHCA5, Solyc07g022900 | component LHCa5 of LHC-I complex | 0.05 | OrthoFinder output from all 47 species | |
| Solyc12g009200.2.1 | LHCA2*1, LHCA6,... | component LHCa6 of LHC-I complex | 0.09 | OrthoFinder output from all 47 species | |
| Spa_g08046 | LHCA5 | linker protein *(LHCa5) between PS-I complex and NDH... | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g29531 | LHCA2 | component *(LHCa2) of LHC-I complex & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e004129_P001 | CAB4, LHCA4,... | component LHCa4 of LHC-I complex | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e009885_P001 | LHCA2*1, LHCA6,... | component LHCa6 of LHC-I complex | 0.13 | OrthoFinder output from all 47 species | |
| Zm00001e015945_P001 | LHCA5, Zm00001e015945 | component LHCa5 of LHC-I complex | 0.08 | OrthoFinder output from all 47 species | |
| Zm00001e022453_P001 | CAB4, LHCA4,... | component LHCa4 of LHC-I complex | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e035349_P002 | LHCA2, Zm00001e035349 | component LHCa2 of LHC-I complex | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| MF | GO:0005509 | calcium ion binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| CC | GO:0005886 | plasma membrane | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| CC | GO:0009512 | cytochrome b6f complex | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| CC | GO:0016020 | membrane | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | HCCA |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | HCCA |
| CC | GO:0070069 | cytochrome complex | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 68 | 234 |
| No external refs found! |