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  5. LOC_Os09g25320.1

LOC_Os09g25320.1 (RUB1, ATRUB1, NEDD8,...)


Aliases : RUB1, ATRUB1, NEDD8, LOC_Os09g25320

Description : ubiquitin-fold protein (RUB)


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g25320.1

Target Alias Description ECC score Gene Family Method Actions
AT2G35635 UBQ7, RUB2 ubiquitin 7 0.04 OrthoFinder output from all 47 species
Als_g31254 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59110 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g10329 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aob_g21615 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16439 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Cba_g13975 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g69243 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G035500.1 Ceric.08G035500 component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.20G068800.1 UBQ14, Ceric.20G068800 UBQ ubiquitin-fold protein & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.27G040600.1 Ceric.27G040600 component *(eL40) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g07346 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29687 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Dde_g36803 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Len_g06287 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Len_g22814 UBQ11 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g23474 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g23519 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g26766 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07156 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g20156 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g31029 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g34858 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g51055 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e021401_P001 UBQ11, Zm00001e021401 Polyubiquitin 3 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species

Label Co-occ.
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 74
IPR000626 Ubiquitin-like_dom 79 150
No external refs found!