LOC_Os09g16290.1 (ABCG40, PDR12,...)

Aliases : ABCG40, PDR12, ATABCG40, ATPDR12, LOC_Os09g16290

Description : subfamily ABCG transporter

Gene families : OG0000071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os09g16290.1
Cluster	HCCA: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
AT3G30842	ATPDR10, PDR10	pleiotropic drug resistance 10	0.02	OrthoFinder output from all 47 species
AT4G15230	ATPDR2, PDR2	pleiotropic drug resistance 2	0.04	OrthoFinder output from all 47 species
Adi_g033664	ABCG40, PDR12,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g34217	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g03117	ABCG40, PDR12,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g06778	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g14195	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g16447	ABCG40, PDR12,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g20545	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g63006	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g63955	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0098.g043944	PEN3, ABCG36,...	subfamily ABCG transporter & original description: CDS=1-4371	0.02	OrthoFinder output from all 47 species
Cba_g10025	ABCG40, PDR12,...	subfamily ABCG transporter & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.04G041200.1	PDR6, ATPDR6,...	subfamily ABCG transporter & original description:...	0.03	OrthoFinder output from all 47 species
Cre04.g224500	PEN3, ABCG36,...	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Cre09.g395750	ATPDR3, PDR3	Solute transport.primary active transport.ABC...	0.01	OrthoFinder output from all 47 species
Dac_g09408	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g08318	PDR11, ATPDR11	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05213	PDR1, ATPDR1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Gb_34309	ATPDR3, PDR3	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Gb_34310	ATPDR3, PDR3	ABC transporter G family member 31 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os01g42350.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Len_g12160	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Len_g22989	ABCG40, PDR12,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
MA_108793g0010	PEN3, ABCG36,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
MA_249533g0010	ATPDR3, PDR3	ABC transporter G family member 31 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp2g03890.1	ATPDR3, PDR3	subfamily ABCG transporter	0.01	OrthoFinder output from all 47 species
Mp2g21340.1	ATPDR3, PDR3	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Nbi_g41029	ABCG40, PDR12,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g17304	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g26168	PEN3, ABCG36,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g11094	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g33371	ATPDR7, PDR7	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g40989	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g59241	PDR11, ATPDR11	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g52599	No alias	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Smo122902	PDR6, ATPDR6	ABC transporter G family member 34 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Smo82705	ATPDR3, PDR3	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Solyc06g076930.2.1	ATPDR3, PDR3,...	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
Solyc08g067620.2.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Solyc11g067000.3.1	PDR6, ATPDR6,...	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Solyc12g019620.2.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
Solyc12g019640.2.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.04	OrthoFinder output from all 47 species
Solyc12g100180.2.1	ABCG40, PDR12,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Spa_g06968	PEN3, ABCG36,...	subfamily ABCG transporter & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g39516	PDR6, ATPDR6	subfamily ABCG transporter & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g45075	ABCG40, PDR12,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g56174	ABCG40, PDR12,...	subfamily ABCG transporter & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g12264	ABCG40, PDR12,...	subfamily ABCG transporter & original description: none	0.07	OrthoFinder output from all 47 species
Zm00001e016714_P002	PDR4, ATPDR4,...	cuticular lipid exporter (PEC1). subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Zm00001e024257_P001	PDR11, ATPDR11,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Zm00001e026148_P001	PDR6, ATPDR6,...	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species
Zm00001e033689_P001	PDR11, ATPDR11,...	subfamily ABCG transporter	0.02	OrthoFinder output from all 47 species
Zm00001e039353_P001	PIS1, ABCG37,...	subfamily ABCG transporter	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	783	935
IPR003439	ABC_transporter-like_ATP-bd	65	228
IPR029481	ABC_trans_N	3	39
IPR013525	ABC_2_trans	1081	1294
IPR013525	ABC_2_trans	411	622
IPR013581	PDR_assoc	627	684

External Links

No external refs found!

LOC_Os09g16290.1 (ABCG40, PDR12,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation