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  5. LOC_Os09g11170.1

LOC_Os09g11170.1 (LOC_Os09g11170)


Aliases : LOC_Os09g11170

Description : plant-specific E3 ubiquitin ligase (RSL/RFA)


Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g11170.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00129p00116540 evm_27.TU.AmTr_v1... Probable E3 ubiquitin-protein ligase ARI5 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00129p00117090 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Aev_g22368 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.06 OrthoFinder output from all 47 species
Aev_g40090 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene14299.t1 Aspi01Gene14299 plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.05 OrthoFinder output from all 47 species
Gb_29625 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 OrthoFinder output from all 47 species
LOC_Os11g38710.1 LOC_Os11g38710 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10123705g0010 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 OrthoFinder output from all 47 species
Mp5g21180.1 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 OrthoFinder output from all 47 species
Pir_g01964 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g06303 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.02 OrthoFinder output from all 47 species
Smo415256 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc03g117860.3.1 Solyc03g117860 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 OrthoFinder output from all 47 species
Solyc03g123470.1.1 Solyc03g123470 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g40446 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.03 OrthoFinder output from all 47 species
Tin_g09748 No alias plant-specific E3 ubiquiTin ligase *(RSL/RFA) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e022191_P001 Zm00001e022191 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 OrthoFinder output from all 47 species
Zm00001e022192_P001 Zm00001e022192 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 282 327
IPR002867 IBR_dom 210 258
No external refs found!