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  5. LOC_Os09g10270.1

LOC_Os09g10270.1 (ASK4, SK4, LOC_Os09g10270)


Aliases : ASK4, SK4, LOC_Os09g10270

Description : target protein binding component SKP1/ASK1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes


Gene families : OG0000379 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000379_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g10270.1
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT2G03190 ASK16, SK16 SKP1-like 16 0.03 OrthoFinder output from all 47 species
AT2G20160 MEO, ASK17 E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 0.03 OrthoFinder output from all 47 species
AT2G25700 ASK3, SK3 SKP1-like 3 0.03 OrthoFinder output from all 47 species
AT4G34470 SK12, ASK12 SKP1-like 12 0.05 OrthoFinder output from all 47 species
Ceric.20G070900.1 ASK1, ATSKP1,... ASK-type linker component of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001187.19 ASK2, SKP1B Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
LOC_Os02g13180.1 SK9, ASK9, LOC_Os02g13180 target protein binding component SKP1/ASK1 of... 0.03 OrthoFinder output from all 47 species
LOC_Os09g10300.1 ASK4, SK4, LOC_Os09g10300 target protein binding component SKP1/ASK1 of... 0.04 OrthoFinder output from all 47 species
MA_121410g0010 ASK1, ATSKP1,... target protein binding component SKP1/ASK1 of... 0.05 OrthoFinder output from all 47 species
MA_85930g0010 ASK2, SKP1B target protein binding component SKP1/ASK1 of... 0.02 OrthoFinder output from all 47 species
Mp2g05290.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g29347 ASK2, SKP1B ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ppi_g09622 ASK2, SKP1B ASK-type linker component of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Smo98727 ASK1, ATSKP1,... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR016073 Skp1_comp_POZ 16 76
IPR016072 Skp1_comp_dimer 124 169
No external refs found!