1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os09g09470.1

LOC_Os09g09470.1 (NEDD1, LOC_Os09g09470)


Aliases : NEDD1, LOC_Os09g09470

Description : regulatory component GCP-WD/NEDD1 of gamma-Tubulin ring complex (gamma-TuRC)


Gene families : OG0003254 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003254_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g09470.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00264710 NEDD1,... Cytoskeleton.microtubular network.microtubule Tubulin... 0.04 OrthoFinder output from all 47 species
AT5G05970 NEDD1 Transducin/WD40 repeat-like superfamily protein 0.07 OrthoFinder output from all 47 species
Adi_g061146 NEDD1 regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin... 0.03 OrthoFinder output from all 47 species
Aev_g20113 NEDD1 regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin... 0.03 OrthoFinder output from all 47 species
Als_g15202 NEDD1 regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin... 0.03 OrthoFinder output from all 47 species
Ceric.09G082900.1 NEDD1, Ceric.09G082900 regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.81 NEDD1 Protein NEDD1 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre13.g565150 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g07730 NEDD1 regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin... 0.02 OrthoFinder output from all 47 species
Dde_g12137 NEDD1 regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin... 0.02 OrthoFinder output from all 47 species
GSVIVT01008874001 NEDD1 Cytoskeleton.microtubular network.microtubule Tubulin... 0.01 OrthoFinder output from all 47 species
GSVIVT01016463001 NEDD1 Cytoskeleton.microtubular network.microtubule Tubulin... 0.07 OrthoFinder output from all 47 species
Lfl_g06677 NEDD1 regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin... 0.02 OrthoFinder output from all 47 species
Msp_g13899 NEDD1 regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin... 0.02 OrthoFinder output from all 47 species
Sam_g25601 No alias regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin... 0.03 OrthoFinder output from all 47 species
Solyc03g079920.3.1 NEDD1, Solyc03g079920 regulatory component GCP-WD/NEDD1 of gamma-Tubulin ring... 0.03 OrthoFinder output from all 47 species
Tin_g06654 NEDD1 regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 41 68
No external refs found!