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  5. LOC_Os09g08460.1

LOC_Os09g08460.1 (FRS5, LOC_Os09g08460)


Aliases : FRS5, LOC_Os09g08460

Description : transcription factor (FAR1)


Gene families : OG0011204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011204_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g08460.1

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g49200.1 LOC_Os02g49200 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os04g26270.1 LOC_Os04g26270 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os06g01730.1 LOC_Os06g01730 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os07g13020.1 LOC_Os07g13020 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os07g45450.1 LOC_Os07g45450 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os08g20486.1 FRS5, LOC_Os08g20486 transcription factor (FAR1) 0.03 OrthoFinder output from all 47 species
LOC_Os12g24400.1 FRS5, LOC_Os12g24400 transcription factor (FAR1) 0.2 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004330 FAR1_DNA_bnd_dom 342 399
IPR018289 MULE_transposase_dom 456 550
No external refs found!