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  5. LOC_Os09g02830.1

LOC_Os09g02830.1 (AGL61, DIA, LOC_Os09g02830)


Aliases : AGL61, DIA, LOC_Os09g02830

Description : transcription factor (MADS/AGL)


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g02830.1

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene15821.t1 SOC1, AGL20,... MADS/AGL-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0116.g046386 AGL65 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g13582 GL19, AGL19 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g46439 AGL7, AP1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01037026001 AGL61, DIA RNA biosynthesis.transcriptional activation.MADS box... 0.06 OrthoFinder output from all 47 species
LOC_Os01g74440.1 AGL61, DIA,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os06g22760.1 AGL61, DIA,... transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
LOC_Os06g30830.1 AGL62, LOC_Os06g30830 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os09g02780.1 AGL61, DIA,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os12g21850.1 AGL61, DIA,... transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Len_g28933 GL19, AGL19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g49478 GL19, AGL19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g51544 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g62136 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002217 AGL15 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Spa_g12713 AGL21 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 22 69
No external refs found!