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  5. LOC_Os09g02780.1

LOC_Os09g02780.1 (AGL61, DIA, LOC_Os09g02780)


Aliases : AGL61, DIA, LOC_Os09g02780

Description : transcription factor (MADS/AGL)


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g02780.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00244880 AGL61, DIA,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00066p00109320 AP3, ATAP3,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00071p00198970 XAL1, AGL12,... RNA biosynthesis.transcriptional activation.MADS box... 0.02 OrthoFinder output from all 47 species
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
AMTR_s00109p00019490 AGL16,... No description available 0.04 OrthoFinder output from all 47 species
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT1G77950 AGL67 AGAMOUS-like 67 0.02 OrthoFinder output from all 47 species
AT2G34440 AGL29 AGAMOUS-like 29 0.02 OrthoFinder output from all 47 species
AT3G57390 AGL18 AGAMOUS-like 18 0.02 OrthoFinder output from all 47 species
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.05 OrthoFinder output from all 47 species
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.05 OrthoFinder output from all 47 species
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.04 OrthoFinder output from all 47 species
AT5G46320 No alias MADS-box family protein 0.03 OrthoFinder output from all 47 species
AT5G51870 AGL71 AGAMOUS-like 71 0.02 OrthoFinder output from all 47 species
Adi_g001519 AGL16 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g033073 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g045544 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g46452 AGL104 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g28162 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g36973 AGL3, SEP4 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g51470 AGL10, CAL1, CAL MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15812.t2 AGL13, Aspi01Gene15812 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene17797.t1 SHP2, AGL5,... MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g76647 STK, AGL11 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G071800.1 AGL91, Ceric.11G071800 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.36G037300.1 AGL8, FUL,... MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dde_g51026 AGL42 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008139001 AGL2, SEP1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01008140001 AGL8, FUL RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01008806001 PI RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01012110001 AGL32, TT16, ABS RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01012250001 AGL7, AP1 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01018450001 AGL6 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
GSVIVT01026207001 AGL32, TT16, ABS RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
Gb_03068 AGL16 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Gb_16301 STK, AGL11 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os01g11510.1 LOC_Os01g11510 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os03g11614.1 AGL2, SEP1,... transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
LOC_Os09g02830.1 AGL61, DIA,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Len_g23079 AGL91 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14037 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g31128 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g34055 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_1090469g0010 SOC1, AGL20, ATSOC1 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_130755g0010 AGL10, CAL1, CAL transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_16629g0010 ANR1, AGL44 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_25342g0010 AGL16 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_2986g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_6544g0010 STK, AGL11 Floral homeotic protein AGAMOUS OS=Panax ginseng... 0.02 OrthoFinder output from all 47 species
MA_770623g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g47587 AGL21 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g24288 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c16_19170V3.1 AGL61, DIA, Pp3c16_19170 AGAMOUS-like 61 0.01 OrthoFinder output from all 47 species
Ppi_g56067 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011014 AGL9, SEP3 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0271.g027022 AGL7, AP1 MADS/AGL-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc12g056460.3.1 SOC1, AGL20,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
Zm00001e000846_P003 AGL4, SEP2,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e003667_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e006950_P001 AGL32, TT16,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e010125_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e012024_P001 AGL4, SEP2,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e014926_P001 AGL16, Zm00001e014926 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e015447_P001 AGL6, Zm00001e015447 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e015728_P001 AGL16, Zm00001e015728 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e015924_P003 SVP, AGL22,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
Zm00001e016529_P004 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e027852_P001 AGL62, Zm00001e027852 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e030373_P001 AGL10, CAL1,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e031267_P003 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e033144_P001 AGL29, Zm00001e033144 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e034629_P001 AGL9, SEP3,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e038716_P004 AGL9, SEP3,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e039610_P001 AGL8, FUL, Zm00001e039610 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Zm00001e039774_P001 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0030246 carbohydrate binding IEP HCCA
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 2 43
No external refs found!