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  5. LOC_Os09g01630.1

LOC_Os09g01630.1 (LOC_Os09g01630)


Aliases : LOC_Os09g01630

Description : Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana (sp|q8lb54|prp38_arath : 316.0)


Gene families : OG0004863 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004863_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g01630.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT2G40650 No alias PRP38 family protein 0.06 OrthoFinder output from all 47 species
Adi_g012219 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g58256 No alias splicing factor *(PRP38) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05834 No alias splicing factor *(PRP38) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g13422 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0185.g056662 No alias splicing factor *(PRP38) & original description: CDS=131-1414 0.04 OrthoFinder output from all 47 species
Cba_g00905 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.13G099000.1 Ceric.13G099000 splicing factor *(PRP38) & original description:... 0.05 OrthoFinder output from all 47 species
Cre12.g503400 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g08450 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g18786 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
MA_214707g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g12850.1 No alias Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Ppi_g05725 No alias splicing factor *(PRP38) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g100060.4.1 Solyc01g100060 Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.12 OrthoFinder output from all 47 species
Spa_g22929 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009450_P001 Zm00001e009450 Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005037 PRP38 10 173
IPR024767 PRP38_C 179 275
No external refs found!