LOC_Os08g43000.1 (LOC_Os08g43000)

Aliases : LOC_Os08g43000

Description : Putative disease resistance protein RGA3 OS=Solanum bulbocastanum (sp|q7xa40|rga3_solbu : 408.0)

Gene families : OG0000694 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000694_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g43000.1
Cluster	HCCA: Cluster_70

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01000639001	No alias	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
GSVIVT01000656001	HRT, RCY1, RPP8	Putative disease resistance protein At3g14460...	0.03	OrthoFinder output from all 47 species
GSVIVT01004021001	No alias	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
GSVIVT01011193001	No alias	Putative disease resistance RPP13-like protein 1...	0.02	OrthoFinder output from all 47 species
GSVIVT01013307001	No alias	Putative disease resistance RPP13-like protein 1...	0.02	OrthoFinder output from all 47 species
GSVIVT01013507001	No alias	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
GSVIVT01013533001	No alias	Putative disease resistance RPP13-like protein 1...	0.02	OrthoFinder output from all 47 species
GSVIVT01022937001	No alias	Putative disease resistance RPP13-like protein 1...	0.02	OrthoFinder output from all 47 species
GSVIVT01031998001	No alias	Putative disease resistance protein At3g14460...	0.03	OrthoFinder output from all 47 species
GSVIVT01032204001	No alias	Putative disease resistance protein RGA4 OS=Solanum bulbocastanum	0.03	OrthoFinder output from all 47 species
LOC_Os04g43340.1	LOC_Os04g43340	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
LOC_Os07g17220.1	LOC_Os07g17220	Putative disease resistance protein At3g14460...	0.07	OrthoFinder output from all 47 species
LOC_Os07g17250.1	LOC_Os07g17250	Putative disease resistance protein At3g14460...	0.05	OrthoFinder output from all 47 species
LOC_Os08g42930.1	LOC_Os08g42930	Disease resistance protein RGA2 OS=Solanum bulbocastanum...	0.05	OrthoFinder output from all 47 species
LOC_Os08g43010.1	LOC_Os08g43010	Putative disease resistance protein RGA1 OS=Solanum...	0.03	OrthoFinder output from all 47 species
LOC_Os09g14490.1	LOC_Os09g14490	Putative disease resistance RPP13-like protein 1...	0.06	OrthoFinder output from all 47 species
LOC_Os11g29110.1	LOC_Os11g29110	Putative disease resistance protein RGA4 OS=Solanum...	0.05	OrthoFinder output from all 47 species
LOC_Os12g03750.1	LOC_Os12g03750	Disease resistance protein RGA2 OS=Solanum bulbocastanum...	0.03	OrthoFinder output from all 47 species
LOC_Os12g32680.1	LOC_Os12g32680	Disease resistance protein RGA2 OS=Solanum bulbocastanum...	0.02	OrthoFinder output from all 47 species
Solyc08g007640.1.1	Solyc08g007640	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Solyc11g071420.3.1	Solyc11g071420	Putative disease resistance RPP13-like protein 1...	0.02	OrthoFinder output from all 47 species
Solyc11g071430.1.1	Solyc11g071430	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
Zm00001e020954_P001	Zm00001e020954	Putative disease resistance protein RGA4 OS=Solanum...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0045735	nutrient reservoir activity	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	173	401
IPR041118	Rx_N	10	92

External Links

No external refs found!

LOC_Os08g43000.1 (LOC_Os08g43000)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation