LOC_Os08g42930.1 (LOC_Os08g42930)

Aliases : LOC_Os08g42930

Description : Disease resistance protein RGA2 OS=Solanum bulbocastanum (sp|q7xbq9|rga2_solbu : 323.0)

Gene families : OG0000694 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000694_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g42930.1

Target	Alias	Description	ECC score	Gene Family Method
AT3G14470	No alias	NB-ARC domain-containing disease resistance protein	0.03	OrthoFinder output from all 47 species
GSVIVT01000639001	No alias	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
GSVIVT01000666001	No alias	Putative disease resistance protein RGA4 OS=Solanum bulbocastanum	0.03	OrthoFinder output from all 47 species
GSVIVT01001399001	RLK1	G-type lectin S-receptor-like serine/threonine-protein...	0.03	OrthoFinder output from all 47 species
GSVIVT01001469001	No alias	Disease resistance protein RGA2 OS=Solanum bulbocastanum	0.03	OrthoFinder output from all 47 species
GSVIVT01004040001	No alias	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
GSVIVT01011193001	No alias	Putative disease resistance RPP13-like protein 1...	0.02	OrthoFinder output from all 47 species
GSVIVT01013307001	No alias	Putative disease resistance RPP13-like protein 1...	0.02	OrthoFinder output from all 47 species
GSVIVT01013508001	No alias	Putative disease resistance protein RGA4 OS=Solanum bulbocastanum	0.02	OrthoFinder output from all 47 species
GSVIVT01013535001	No alias	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
GSVIVT01022851001	No alias	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
GSVIVT01022856001	No alias	Putative disease resistance RPP13-like protein 1...	0.05	OrthoFinder output from all 47 species
GSVIVT01023320001	ZAR1	Putative disease resistance RPP13-like protein 1...	0.02	OrthoFinder output from all 47 species
GSVIVT01031998001	No alias	Putative disease resistance protein At3g14460...	0.04	OrthoFinder output from all 47 species
GSVIVT01032204001	No alias	Putative disease resistance protein RGA4 OS=Solanum bulbocastanum	0.03	OrthoFinder output from all 47 species
GSVIVT01034675001	No alias	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
GSVIVT01036657001	No alias	Putative disease resistance RPP13-like protein 1...	0.06	OrthoFinder output from all 47 species
GSVIVT01038298001	No alias	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
LOC_Os01g17130.1	LOC_Os01g17130	Putative disease resistance protein At3g14460...	0.05	OrthoFinder output from all 47 species
LOC_Os07g17220.1	LOC_Os07g17220	Putative disease resistance protein At3g14460...	0.04	OrthoFinder output from all 47 species
LOC_Os07g17250.1	LOC_Os07g17250	Putative disease resistance protein At3g14460...	0.05	OrthoFinder output from all 47 species
LOC_Os08g43000.1	LOC_Os08g43000	Putative disease resistance protein RGA3 OS=Solanum...	0.05	OrthoFinder output from all 47 species
LOC_Os09g14490.1	LOC_Os09g14490	Putative disease resistance RPP13-like protein 1...	0.04	OrthoFinder output from all 47 species
LOC_Os12g29160.1	LOC_Os12g29160	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Solyc02g030280.2.1	Solyc02g030280	Putative disease resistance protein RGA4 OS=Solanum...	0.04	OrthoFinder output from all 47 species
Solyc11g068360.1.1	Solyc11g068360	Putative disease resistance RPP13-like protein 1...	0.03	OrthoFinder output from all 47 species
Zm00001e031999_P001	Zm00001e031999	Putative disease resistance protein RGA3 OS=Solanum...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0008037	cell recognition	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0048544	recognition of pollen	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	113	347

External Links

No external refs found!

LOC_Os08g42930.1 (LOC_Os08g42930)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation