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  5. LOC_Os08g42920.1

LOC_Os08g42920.1 (LOC_Os08g42920)


Aliases : LOC_Os08g42920

Description : component RPL7 of LSU proteome component


Gene families : OG0001142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001142_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g42920.1
Cluster HCCA: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00107780 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AMTR_s00086p00164400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AT1G80750 No alias Ribosomal protein L30/L7 family protein 0.04 OrthoFinder output from all 47 species
AT2G01250 No alias Ribosomal protein L30/L7 family protein 0.05 OrthoFinder output from all 47 species
Adi_g124765 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g30462 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aop_g10797 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0129.g048841 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0870.g090589 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g26587 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.34G033800.1 Ceric.34G033800 component *(uL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020909.42 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Cre12.g537800 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Dac_g10886 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Dcu_g33812 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Dde_g04672 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01029288001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Gb_20650 No alias component RPL7 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Lfl_g27660 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_10428203g0010 No alias component RPL7 of LSU proteome component 0.02 OrthoFinder output from all 47 species
MA_109845g0010 No alias component RPL7 of LSU proteome component 0.05 OrthoFinder output from all 47 species
MA_47548g0010 No alias component RPL7 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp3g13040.1 No alias component RPL7 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Msp_g04692 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ore_g33373 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c1_39470V3.1 Pp3c1_39470 Ribosomal protein L30/L7 family protein 0.05 OrthoFinder output from all 47 species
Pp3c2_1610V3.1 Pp3c2_1610 Ribosomal protein L30/L7 family protein 0.02 OrthoFinder output from all 47 species
Pp3c2_5820V3.1 Pp3c2_5820 Ribosomal protein L30/L7 family protein 0.03 OrthoFinder output from all 47 species
Ppi_g12581 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015032 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g06365 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g10126 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g10127 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g31082 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Solyc08g075090.4.1 Solyc08g075090 transcription factor (bHLH). component RPL7 of LSU... 0.03 OrthoFinder output from all 47 species
Spa_g07368 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g21600 No alias component *(uL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e003731_P002 Zm00001e003731 component RPL7 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e007015_P002 Zm00001e007015 component RPL7 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e022294_P001 Zm00001e022294 component RPL7 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Zm00001e024250_P001 Zm00001e024250 component RPL7 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Zm00001e040072_P002 Zm00001e040072 component RPL7 of LSU proteome component 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
InterPro domains Description Start Stop
IPR016082 Ribosomal_L30_ferredoxin-like 90 140
IPR012988 Ribosomal_L30_N 13 76
No external refs found!