LOC_Os08g41730.1 (PBF1, LOC_Os08g41730)

Aliases : PBF1, LOC_Os08g41730

Description : component beta type-6 of 26S proteasome

Gene families : OG0004409 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004409_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g41730.1

Target	Alias	Description	ECC score	Gene Family Method
Aob_g00526	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Cba_g31823	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Dde_g01948	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
GSVIVT01027613001	PBF1	Protein degradation.26S proteasome.20S core...	0.04	OrthoFinder output from all 47 species
Len_g17930	PBF1	beta-type-6 component *(PBF) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Mp1g12450.1	PBF1	component beta type-6 of 26S proteasome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004298	threonine-type endopeptidase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	IEA	Interproscan
MF	GO:0070003	threonine-type peptidase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005758	mitochondrial intermembrane space	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006825	copper ion transport	IEP	HCCA
MF	GO:0016530	metallochaperone activity	IEP	HCCA
MF	GO:0016531	copper chaperone activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
CC	GO:0031970	organelle envelope lumen	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	9	204

External Links

No external refs found!