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  5. LOC_Os08g40880.1

LOC_Os08g40880.1 (UBP1B, LOC_Os08g40880)


Aliases : UBP1B, LOC_Os08g40880

Description : mRNA-binding regulatory factor (UBP1)


Gene families : OG0002014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g40880.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00204100 evm_27.TU.AmTr_v1... Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia 0.03 OrthoFinder output from all 47 species
AT1G54080 UBP1A oligouridylate-binding protein 1A 0.03 OrthoFinder output from all 47 species
Adi_g082035 UBP1A stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
Als_g28427 UBP1B stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01035575001 UBP1B Oligouridylate-binding protein 1B OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Ppi_g31728 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Spa_g19380 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e021914_P002 UBP1B, Zm00001e021914 mRNA-binding regulatory factor (UBP1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:0140352 export from cell IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 160 230
IPR000504 RRM_dom 284 350
IPR000504 RRM_dom 75 141
No external refs found!