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  5. LOC_Os08g39940.1

LOC_Os08g39940.1 (ATPGIP1, PGIP1, LOC_Os08g39940)


Aliases : ATPGIP1, PGIP1, LOC_Os08g39940

Description : Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica (sp|q8gt95|pgip1_orysj : 186.0)


Gene families : OG0002518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002518_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g39940.1

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01032044001 No alias Polygalacturonase inhibitor OS=Pyrus communis 0.12 OrthoFinder output from all 47 species
Gb_04975 No alias Receptor-like protein Cf-9 homolog OS=Solanum... 0.02 OrthoFinder output from all 47 species
Gb_21736 No alias no description available(sp|f4j8g2|rlp33_arath : 100.0) 0.02 OrthoFinder output from all 47 species
Gb_34873 No alias LRR receptor-like serine/threonine-protein kinase GSO1... 0.04 OrthoFinder output from all 47 species
LOC_Os05g01370.1 LOC_Os05g01370 pathogen polygalacturonase inhibitor (PGIP) 0.03 OrthoFinder output from all 47 species
LOC_Os05g01380.1 PGIP2, ATPGIP2,... pathogen polygalacturonase inhibitor (PGIP) 0.01 OrthoFinder output from all 47 species
LOC_Os05g01444.1 ATPGIP1, PGIP1,... pathogen polygalacturonase inhibitor (PGIP) 0.01 OrthoFinder output from all 47 species
MA_1001810g0020 No alias LRR receptor-like serine/threonine-protein kinase RCH1... 0.03 OrthoFinder output from all 47 species
MA_10428862g0010 No alias LRR receptor-like serine/threonine-protein kinase GSO1... 0.02 OrthoFinder output from all 47 species
MA_10429114g0010 No alias Receptor-like protein Cf-9 homolog OS=Solanum... 0.02 OrthoFinder output from all 47 species
MA_10432014g0010 No alias Receptor-like protein 9DC2 OS=Solanum pimpinellifolium... 0.04 OrthoFinder output from all 47 species
MA_10432079g0010 No alias Probable leucine-rich repeat receptor-like protein... 0.09 OrthoFinder output from all 47 species
MA_10432854g0010 No alias Receptor-like protein EIX1 OS=Solanum lycopersicum... 0.04 OrthoFinder output from all 47 species
MA_10436129g0010 No alias Receptor-like protein 9DC3 OS=Solanum pimpinellifolium... 0.02 OrthoFinder output from all 47 species
MA_11057g0010 No alias Receptor-like protein 9DC3 OS=Solanum pimpinellifolium... 0.03 OrthoFinder output from all 47 species
MA_116166g0010 No alias LRR receptor-like serine/threonine-protein kinase FLS2... 0.03 OrthoFinder output from all 47 species
MA_128387g0010 No alias Receptor-like protein 9DC3 OS=Solanum pimpinellifolium... 0.02 OrthoFinder output from all 47 species
MA_170534g0010 No alias Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_173871g0010 FLS2 Receptor-like protein 9DC3 OS=Solanum pimpinellifolium... 0.03 OrthoFinder output from all 47 species
MA_177143g0010 No alias Receptor-like protein 9DC3 OS=Solanum pimpinellifolium... 0.03 OrthoFinder output from all 47 species
MA_177713g0010 No alias LRR receptor-like serine/threonine-protein kinase GSO1... 0.02 OrthoFinder output from all 47 species
MA_215266g0020 No alias Receptor-like protein 9DC3 OS=Solanum pimpinellifolium... 0.04 OrthoFinder output from all 47 species
MA_25228g0020 No alias LRR receptor-like serine/threonine-protein kinase RCH1... 0.03 OrthoFinder output from all 47 species
MA_59810g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_82361g0020 FLS2 no description available(sp|f4j8g2|rlp33_arath : 109.0) 0.02 OrthoFinder output from all 47 species
MA_87079g0010 No alias LRR receptor-like serine/threonine-protein kinase FLS2... 0.02 OrthoFinder output from all 47 species
MA_8806113g0010 No alias Receptor-like protein 9DC3 OS=Solanum pimpinellifolium... 0.04 OrthoFinder output from all 47 species
MA_9047991g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e029700_P001 ATPGIP1, PGIP1,... pathogen polygalacturonase inhibitor (PGIP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 117 136
IPR013210 LRR_N_plant-typ 5 43
No external refs found!