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  5. LOC_Os08g38080.1

LOC_Os08g38080.1 (CIB5, LOC_Os08g38080)


Aliases : CIB5, LOC_Os08g38080

Description : transcription factor (bHLH). transcriptional regulator (CIB)


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g38080.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Adi_g041743 LRL2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g048981 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Adi_g058340 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07900 LRL3 bHLH-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Als_g06024 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Als_g28177 No alias regulatory protein (CIB) of blue light perception &... 0.01 OrthoFinder output from all 47 species
Als_g49595 LRL3 bHLH-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Als_g61540 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25247.t2 LRL3, Aspi01Gene25247 bHLH-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene28550.t1 CIB1, Aspi01Gene28550 regulatory protein (CIB) of blue light perception &... 0.01 OrthoFinder output from all 47 species
Aspi01Gene66676.t1 Aspi01Gene66676 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ceric.10G063500.1 PIF3, POC1,... bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ehy_g29606 No alias bHLH-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g24040 No alias regulatory protein (CIB) of blue light perception &... 0.01 OrthoFinder output from all 47 species
Nbi_g00901 LRL3 bHLH-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g05843 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo413232 RHD6 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Smo444782 LRL2 RNA biosynthesis.transcriptional activation.bHLH... 0.01 OrthoFinder output from all 47 species
Tin_g05527 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 185 233
No external refs found!