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  5. LOC_Os08g35070.1

LOC_Os08g35070.1 (LOC_Os08g35070)


Aliases : LOC_Os08g35070

Description : plant-specific E3 ubiquitin ligase (RSL/RFA)


Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g35070.1
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00129p00117090 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT2G25360 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
LOC_Os09g25220.1 LOC_Os09g25220 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 OrthoFinder output from all 47 species
Zm00001e022191_P001 Zm00001e022191 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 OrthoFinder output from all 47 species
Zm00001e034155_P001 Zm00001e034155 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 116 168
IPR027370 Znf-RING_euk 30 79
No external refs found!