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  5. LOC_Os08g33830.1

LOC_Os08g33830.1 (PTB1, PTB, ATPTB1,...)


Aliases : PTB1, PTB, ATPTB1, LOC_Os08g33830

Description : PTB-type RNA splicing factor


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os08g33830.1

Target Alias Description ECC score Gene Family Method Actions
Ala_g16201 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38746 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g10865 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g05343 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e001826_P003 PTB1, PTB,... PTB-type RNA splicing factor 0.06 OrthoFinder output from all 47 species
Zm00001e020441_P003 PTB2, ATPTB2,... PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e022452_P003 PTB1, PTB,... PTB-type RNA splicing factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR021790 PTBP1-like_RRM2 242 320
IPR000504 RRM_dom 21 71
No external refs found!