1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os08g33540.1

LOC_Os08g33540.1 (LOC_Os08g33540)


Aliases : LOC_Os08g33540

Description : adaptor component ClpS of chloroplast Clp-type protease complex


Gene families : OG0005952 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005952_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g33540.1
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Aev_g05087 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.05 OrthoFinder output from all 47 species
Ala_g00971 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Als_g00481 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Aob_g02628 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Aop_g02009 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Aspi01Gene37738.t1 Aspi01Gene37738 adaptor component *(ClpS) of chloroplast Clp-type... 0.05 OrthoFinder output from all 47 species
Aspi01Gene37740.t1 Aspi01Gene37740 adaptor component *(ClpS) of chloroplast Clp-type... 0.05 OrthoFinder output from all 47 species
Azfi_s0060.g034789 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Ceric.39G010100.1 Ceric.39G010100 adaptor component *(ClpS) of chloroplast Clp-type... 0.06 OrthoFinder output from all 47 species
Cre17.g696400 No alias Protein degradation.peptidase families.serine-type... 0.02 OrthoFinder output from all 47 species
Dcu_g03444 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.06 OrthoFinder output from all 47 species
Dde_g01293 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Ehy_g03330 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Ehy_g11848 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
GSVIVT01008253001 No alias Protein degradation.peptidase families.serine-type... 0.07 OrthoFinder output from all 47 species
Len_g04580 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.06 OrthoFinder output from all 47 species
Lfl_g00995 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Msp_g03446 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Nbi_g00525 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Pir_g00333 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Ppi_g01891 No alias adaptor component *(ClpS) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Smo69252 No alias Protein degradation.peptidase families.serine-type... 0.05 OrthoFinder output from all 47 species
Solyc03g119700.3.1 Solyc03g119700 adaptor component ClpS of chloroplast Clp-type protease complex 0.05 OrthoFinder output from all 47 species
Zm00001e004147_P001 Zm00001e004147 adaptor component ClpS of chloroplast Clp-type protease complex 0.07 OrthoFinder output from all 47 species
Zm00001e022443_P001 Zm00001e022443 adaptor component ClpS of chloroplast Clp-type protease complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0030163 protein catabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004375 glycine dehydrogenase (decarboxylating) activity IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016642 oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003769 ClpS_core 82 148
No external refs found!