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  5. LOC_Os08g33082.1

LOC_Os08g33082.1 (RAD4, ATRAD4, LOC_Os08g33082)


Aliases : RAD4, ATRAD4, LOC_Os08g33082

Description : DNA repair protein (XPC)


Gene families : OG0004861 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004861_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g33082.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Adi_g011649 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0132.g049198 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: CDS=51-3317 0.04 OrthoFinder output from all 47 species
Ceric.12G062000.1 RAD4, ATRAD4,... DNA repair protein *(XPC) & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g10343 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_25624 RAD4, ATRAD4 DNA repair protein (XPC) 0.02 OrthoFinder output from all 47 species
Ppi_g32348 RAD4, ATRAD4 DNA repair protein *(XPC) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g07162 No alias DNA repair protein *(XPC) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR018328 Rad4_beta-hairpin_dom3 681 753
IPR018325 Rad4/PNGase_transGLS-fold 433 552
IPR018326 Rad4_beta-hairpin_dom1 559 607
IPR018327 BHD_2 612 674
No external refs found!