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  5. LOC_Os08g32060.1

LOC_Os08g32060.1 (LOC_Os08g32060)


Aliases : LOC_Os08g32060

Description : E3 ubiquitin ligase (PUB)


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g32060.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267930 evm_27.TU.AmTr_v1... U-box domain-containing protein 19 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G10560 PUB18, ATPUB18 plant U-box 18 0.03 OrthoFinder output from all 47 species
AT1G60190 No alias ARM repeat superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G42340 PUB15 Plant U-Box 15 0.02 OrthoFinder output from all 47 species
Adi_g009234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g16594 PUB14, ATPUB14 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g38714 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17547 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g00484 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g19192 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44182.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene44183.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44184.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44185.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0102.g044585 ATPUB17, PUB17 not classified & original description: CDS=188-889 0.05 OrthoFinder output from all 47 species
Ceric.10G010300.1 ATPUB17, PUB17,... not classified & original description: pacid=50611933... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020943.20 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g08066 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g08480 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g23493 PUB18, ATPUB18 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32706 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g02654 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03347 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13215 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01023893001 PUB15 U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01036669001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_10627 PUB8, B80 U-box domain-containing protein 13 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_20805 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Gb_29276 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os03g29280.1 LOC_Os03g29280 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os05g39930.1 LOC_Os05g39930 U-box domain-containing protein 16 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Len_g41552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10431607g0010 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.04 OrthoFinder output from all 47 species
MA_196504g0010 No alias U-box domain-containing protein 1 OS=Medicago truncatula... 0.04 OrthoFinder output from all 47 species
MA_69133g0010 PUB14, ATPUB14 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Msp_g15616 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g35257 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05525 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g20708 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11291 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c10_4480V3.1 ATPUB17, PUB17,... plant U-box 13 0.01 OrthoFinder output from all 47 species
Ppi_g30846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g03488 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g114160.1.1 Solyc03g114160 E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
Solyc12g088360.2.1 Solyc12g088360 U-box domain-containing protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc12g094610.3.1 PUB15, Solyc12g094610 U-box domain-containing protein 15 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g05552 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014566_P002 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
Zm00001e019429_P001 Zm00001e019429 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e023475_P001 Zm00001e023475 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Zm00001e031915_P001 Zm00001e031915 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e034012_P001 Zm00001e034012 E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 284 348
IPR000225 Armadillo 420 455
No external refs found!