LOC_Os08g31870.1 (LOC_Os08g31870)

Aliases : LOC_Os08g31870

Description : platform ATPase (CDC48)

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g31870.1

Target	Alias	Description	ECC score	Gene Family Method
Als_g39841	CDC48A, CDC48, ATCDC48	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g10573	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g16600	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g38164	CDC48A, CDC48, ATCDC48	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g07429	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09970	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g10495	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo89456	emb1354, CDC48C	Cell division control protein 48 homolog C...	0.02	OrthoFinder output from all 47 species
Spa_g22537	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e022375_P001	Zm00001e022375	Cell division cycle protein 48 homolog OS=Glycine max...	0.02	OrthoFinder output from all 47 species
Zm00001e025331_P002	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
BP	GO:0009690	cytokinin metabolic process	IEP	HCCA
BP	GO:0010817	regulation of hormone levels	IEP	HCCA
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	HCCA
MF	GO:0019139	cytokinin dehydrogenase activity	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
BP	GO:0042445	hormone metabolic process	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004201	Cdc48_dom2	136	201
IPR003338	CDC4_N-term_subdom	32	116
IPR041569	AAA_lid_3	682	717
IPR041569	AAA_lid_3	404	444
IPR003959	ATPase_AAA_core	526	659
IPR003959	ATPase_AAA_core	252	381

External Links

No external refs found!