LOC_Os08g30740.1 (ATH1, ATATH1, ABCA2,...)

Aliases : ATH1, ATATH1, ABCA2, LOC_Os08g30740

Description : fatty acid transporter (ABCA). subfamily ABCA transporter

Gene families : OG0001787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001787_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g30740.1

Target	Alias	Description	ECC score	Gene Family Method
AT5G61690	ATH15, ATATH15	ABC2 homolog 15	0.02	OrthoFinder output from all 47 species
Aspi01Gene08539.t1	ATH1, ATATH1,...	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene08540.t1	ATH11, ATATH11,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene08542.t1	ATH1, ATATH1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0022.g016230	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: CDS=354-3422	0.02	OrthoFinder output from all 47 species
Lfl_g02291	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005516	calmodulin binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	551	694

External Links

No external refs found!